Kunu's Expertise


    1. Computational Biology (Molecular Modeling)
    • Molecular Dynamics Simulation
    • Automated Docking
    • Homology Modeling
    • Brownian Dynamics Simulation
    • Quantum Chemistry
    • Monte Carlo Simulation
    • Free Energy Calculation
    2. Computer-Aided Drug Design (CADD)
    • Quantitative Structure-Activity Relationship (2D/3D QSAR)
    • Pharmacophore Model Developing
    • Lead Compound Searching using Databases
    3. Bioinformatics
    • Sequence Alignment
    • New Algrorithm Development
    • Building Gene/Protein Networks
    • Building Biodata Server
    (4. Extra Skills:)
    • Building 'Beowulf Cluster'
    • System administrating
    • Webpage design/building
    • Network Security and Hacking
    • Photography
    • Satety Driving

    -Familiar Software, OSs, and Programming Languages
    •  1.General Molecular Modeling: InsightII, Cerius2, QUANTA
    •  2. Molecular Dynamics: CHARMM, NAMD, DISCOVER, GROMACS, AMBER, NWChem
    •  3. Brownian Dynamics:  UHBD(University of Houston Brownian Dynamics)
    •  4. Electrostatics: UHBD, Delphi, Grasp
    •  5. pKa Calculation: UHBD
    •  6. Homology modeling: Homology, Modeller
    •  7. Drug Design & QSAR: Catalyst, Cerius2(QSAR+, LUDI)
    •  8. Docking: Autodock, GOLD, BOSS, DOT, ZDOCK
    •  9. Quantum Mechanical Calculations: Ampac/Mopac
    • 10. Database Searching : Catalyst
    • 11. MD Analysis/Animation: WHATIF, CHARMM, VMD, InsightII, Quanta
    • 12. Image Creating: PyMOL, VMD, Molscript, InsightII, Rasmol, Molmol
    • 13. Image Manipulating: GIMP (Linux), Photoshop (Windows)
    • 14. Statistical Analyis: SPSS, QSAR+
    • 15. Ploting Graph : xmgr, GD (using perl)
    -Computers & OSs:
    •  1. Supercomputer for massive (parallel)computing: IBM SP2  (AIX 4.3), CRAY T3E (UNICOS/mk), and Compaq AlphaServer SC TS2.5 (Tru64 UNIX V5.1)
    •  2. Workstation for usual work and visualization: SGI Octane and O2 (OS: IRIX6.4)
    •  3. Linux (Beowulf) Cluster (Linux)
    •  4. Pentium PCs : Red Hat LINUX
    -Programming Languages:
    •  1. Frequently : Fortran, Perl, Awk, Sed, Shell script,...
    •  2. Rarely : C,  Python, Tcl, Javascript,...
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